NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206682_10000543

Scaffold Ga0206682_10000543


Overview

Basic Information
Taxon OID3300021185 Open in IMG/M
Scaffold IDGa0206682_10000543 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)41080
Total Scaffold Genes67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)51 (76.12%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.6907Long. (o)-122.3448Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001153Metagenome / Metatranscriptome764Y
F006939Metagenome / Metatranscriptome361N
F030435Metagenome / Metatranscriptome185Y
F033796Metagenome / Metatranscriptome176N
F036783Metagenome / Metatranscriptome169N
F053299Metagenome / Metatranscriptome141N
F059965Metagenome / Metatranscriptome133N
F065669Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0206682_1000054315F001153GAGMAIPAKKYSEVIAKKVVAGVKNGVAVRDILGSVQKYQDAPASTATFYKLYGNLIAETKADIVGEIGSVVVEAAKGGDFKAAEFFLRSKGGWSPNSTVNEVEQDVDPDLDESAIDSLMSLLGKSDPDEETDNG
Ga0206682_1000054317F065669AGGAGMPKVVSPKVFIDTLESFFDEHGGHQRIIASAFAQYIHTNWDEYTGSYSDACGVRDILNACYDLSIPEINVGQWSLYVHYNSNACYASKLVDMESKNGS
Ga0206682_1000054323F036783AGGAGMLEIVRQKYGRHVDTRVYIDLGYGEMEIDVEDIEMVDGELSAMAYCPQREIELYADHKDCERALAKFEKENSNE
Ga0206682_1000054326F033796AGGAMSSKQDENKTYKVAGVHSGKKGVTVLDGNKRVLEEAEQSAKLLTGKYALENSLGITNFVAFNTHALTMLPPYSIDMEAEWNYVVEQEGDDTPSVEINRQIEGSI
Ga0206682_1000054327F006939AGAAGGMTLPLNMVTNVLSENQNKFITVKFLTKDNEERTYTGRMNVIKGLKGNEKGRIASEALRKAGYITLKTKQGYKCFNVDRVLGFVAGGRRIFGLGNEL
Ga0206682_1000054328F059965GAGMPLPPSMEMELIELGILKSDTEELESIAEQTGFYALRAETIAWHNKLIIDGEVMF
Ga0206682_1000054330F053299AGGAGMKDYKPYYRTDKMKQEELRTAKYVSILFFTMIGFSFIGFSFVLVKAMLYMTGLFL
Ga0206682_1000054331F030435N/AMNNKDILDMCRRLASKYYNHQDYDDIVSEGVVLCLKMRAEGIKEPSKLYYSARTAMFQYVNVSMSNFSYPKGMAGREAVLEDTIEYVVSDDVDIPSEDLYGSYELKNSIENLKKFLTDREWKVFMILYNNNNNLTDTAEVLKLSKQRVEQIRNKIRDKLVTICELDI
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