Scaffold Ga0206682

Basic Information
Taxon OID	3300021185 Open in IMG/M
Scaffold ID	Ga0206682_10001017 Open in IMG/M
Source Dataset Name	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021185 Open in IMG/M

Scaffold ID

Ga0206682_10001017 Open in IMG/M

Source Dataset Name

Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	28344
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (53.85%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

28344

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (53.85%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.6907	Long. (^o)	-122.3448	Alt. (m)	Depth (m)	40
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

36.6907

Long. (^o)

-122.3448

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F040106	Metagenome / Metatranscriptome	162	N
F042905	Metagenome / Metatranscriptome	157	N
F042906	Metagenome / Metatranscriptome	157	Y
F052547	Metagenome / Metatranscriptome	142	N
F080057	Metagenome / Metatranscriptome	115	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0206682_1000101710	F080057	AGGA	MLNNDWKNIVDGGRGEEFTSIDNMKQYKIQVNLEILEGCSYMCPGCFVKRKGNWNPNSIATFHSLAYELKDRDDIVLDDIVIGPTDFYGAQNLEEIINNQRLADAISMMPEDNRNIQHNCSILGSLSEKDIEGKIKSIENSLLGKVVEAWDVQIALDLNRLMNDQVYLDALDERVETFKNSSLNFEISMATNIVKGVEDILFPAIEFVRDRYETVIEVLPSVVRSFNHSAKHGDKLFEWNDMLTRLAVDPYRFKNKFHFLQGDVSHKAFHYSVISIYHGDMYLSPFIYENAQIHTDDFKVDNGWLWLPDADITDYILRKKDEVVVSQIENSGNKECGSCKYLNICANRMVPMIMDTVFDGRKECILNKDVIGLYDDEVYHGNSY
Ga0206682_1000101711	F052547	N/A	MMRFIMGIVTNNKRAAQADKDFDLSFSEGHEIKVQFNCEVLSGCEFKCKGCFVNKLGSNMGSYDRLNNAIDLFNTNGYRVSTVNIGPTDLFGNNNVIELLQDETFRECLSKVSTIQFVTTLTNISSEVIDLLNSIPKIDGFMYDVNIALQPPVDWDWVEERLNLLNGFTDDLNYYMVYNMGNDDEYNSKVLEMSELVEDRFDSILTLNPSFFRAPKSKVQQHLIEKWKGYDFSDDLMPKTFIDQAQGGSLELNYTYCNERFFWTPFVYDIALIGTDEFKVKDENDIESWTEAKSFQFMEQLTYSAETNNCGSCPNMMTCIDKGVLSYMKHHSLLSCVFPGVVTTNKS
Ga0206682_100010175	F040106	N/A	MHTIATQVAIVVATVRGEEDKMSMQKSYCKQMRYSGPESLSPDSASKFDVLIQMEVLAGCDHGCLGCFVDKNIDPDMNQQIIDRAKELTDGVARTGLNLREFVIGPTDFFSATNTESVLNNSIVQDIMREHTGARIAAPAKFDIATMERVKEIYAILDDEDKFRRDMIIEFIMPIGKVDQMLNDEDYFNNVMEKVQFFKDSTPKQMDWSWTLQASNVVGKKIDKETYNKIIQKSVNEYETIVEMNPAFSRARSQLVQRRNLFGWNDFLGKVIDKDNAQETVMSMANLYCNSINFIGLTIVPGENGPTTHLNVMLHEQAFFLNNKNLDVTGLTFEEILDRKNELVTKGINRSSKVSDCNGCQFAVACASRLIFEAQETLNVDGCVLNKDVLAEYNPYDWTWNDDAMEKLGVTS
Ga0206682_100010178	F042905	N/A	MIVHLNGTYAGYYSYDEDKSPINTDFLRTEINLDILHGCSQMCPGCFIPRKNLTKADNLETLYNLLIEGAYHPDEITVGPTDIFDAENFREIMTHPYMKKLYGISAIGFTSTLLQSYQEIRYKLDMIWGLYKDIHRIPDIDFKIVLDIDKYLDGELDDWYKKLEMFKLGSVQFRVNYHKDVFKRIGYNELCQRVFDDFNAPVVITPSFLTDRNVRGKVSQHLENFKRDMLEQKIDDKWLNLYTFFDAKFNGYGCQNYSFYNNKLYLNPFLYDVIIQRTPQFETTMDANTLYDNIEYAQQVDDCNGCEYMMSCAERNIHLYMESRGLDSCVALKEYMYASD
Ga0206682_100010179	F042906	AGGAG	MPLIKNNLYYEMTTETQTKPVSAVKIQLDVLDGCHHKCPGCFVHRRGNSSDPHQLEEAKQFIKTITDQGILVDEMLIGPTDFLASENFYEVMPHLLDVINENSPILAFVSTLIDGDIKKFCQFITDNINLDTEIEIGIATNPHKFFNEDYIQHVSEILDYIDKNLQHEVTYTFVVNIKDYGLDYEELHDQAVKRFDTILDFIPSVSRSHKANIILKTLDEFNEYFSTWHRESKLNNIMVDHSHAGMNYTVLNYKRGEWYLSPFMYENMAIYHDMFKVDNFNSVNGMVEQQIESAKGTECEDCPLFFSCYNRKIIMLRDYLGVDRCIAPKENMLNNIHNYNAPAQTMYQWDGYSVENDKQGYRKKFLVTTDDDPELERIKDISYVK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0206682_10001017

Overview

Ecosystem & Geography

Associated Families

Sequences