NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206682_10001053

Scaffold Ga0206682_10001053


Overview

Basic Information
Taxon OID3300021185 Open in IMG/M
Scaffold IDGa0206682_10001053 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27665
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)45 (88.24%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.6907Long. (o)-122.3448Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000256Metagenome / Metatranscriptome1448Y
F005590Metagenome / Metatranscriptome395N
F005843Metagenome / Metatranscriptome388Y
F009460Metagenome / Metatranscriptome317N
F027482Metagenome194N
F039583Metagenome163N

Sequences

Protein IDFamilyRBSSequence
Ga0206682_1000105315F039583AGGAGMTNEKQTFQNQANRMAARKKFLDALQEDQREALQKSFDAMQNCVWMLNECNDLYVSDVAKLQSAYHELQNIFFEIEPSDWQLERFAEHDVKWPPAPRGRPAKSD
Ga0206682_1000105318F027482AGGMDKKDLEKWLDRMFAEGKAVAYPCGHFSGREWCRSFDEKLASCLTLAELEGFANRRRFDPSLPRWTAAERAEILKRKIKLEKGKRK
Ga0206682_1000105328F005843GGAGGMTLAEPVFMAFVIFSSPDECKAFAKYYDLARIFEPQCVEMGGEADYRRPWPDVRPQPRPTQENENG
Ga0206682_1000105329F009460AGGAGMAKWDLSKLENSASVGAHIDEDSSAPTQPTPQMIIMSIRRKADIMRMDAARKPERRTMKQRAEEIISLCDMLERRL
Ga0206682_1000105331F005590GGAGGMTENLTPLERWKELAIIENARMKRRLIGRDVMHAYAYKPWPLEKLRKEIKRCLSRHDELSVGDLCSMIEQDAVHIDIGLKTMRERRTIVKTSFIEGQQLYRLRTQEEFAL
Ga0206682_1000105337F000256N/AMADGVSGIGSAPFNVGSDIHQQTQTRERIEAHLVEQRVAKEHRANHTHLEALREQKLDLGKGYDRFGAKTNADRPQGTNINIEV
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