NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206682_10003092

Scaffold Ga0206682_10003092


Overview

Basic Information
Taxon OID3300021185 Open in IMG/M
Scaffold IDGa0206682_10003092 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14529
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (55.17%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.6907Long. (o)-122.3448Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016207Metagenome249Y
F043079Metagenome157N
F083239Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0206682_1000309210F083239GGAMTENYLDLTIDEVYDVITSVNVWPQSFDMSKKIAFMNHMITYFEKKEEYEKCAKLQRLIHVMEDS
Ga0206682_1000309228F016207N/AMRYYILYPGNTENDTINAINQLGDDNGFGVFWANRGLNVLMNAVDQQHSITEELVIKCERGKSYSIEEFLDKIKSLKVRIQD
Ga0206682_100030929F043079AGAAGMKNVLNYNGSSMSWKIVSKITDTYDFQDGSQNSYIVYVQDSAGINIAAKEAYGIADRTKVTKELINEYQEYGIVKIEHQDH
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