NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206682_10029090

Scaffold Ga0206682_10029090


Overview

Basic Information
Taxon OID3300021185 Open in IMG/M
Scaffold IDGa0206682_10029090 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3321
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.6907Long. (o)-122.3448Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005352Metagenome / Metatranscriptome403Y
F025150Metagenome / Metatranscriptome203Y
F047922Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0206682_100290903F047922GAGGMTPQEIVDHKRKWMMASYHESTVHTDLRSQVREWCKDHCFQWRYDIKHFTDVYFDTVRFELEEDFYAFNLWYIGVWKGD
Ga0206682_100290904F005352GAGGMTHPALDKPYIQLICNPYEHPTSINTRVTIDVMQKDLSRDDMIEVLEGFMKAMGYSFSSKESLCIEAYD
Ga0206682_100290906F025150GGAGMINVQTEGRDISKYSTFIDECIMSLFPEDATYDIYFEVKKFVDKDGSHAGFCIGDDIESVISIATHWIYEDGEEIPYEPHEMAANIAHELVHAKQFYREQINMVDNVWKHNNVRINCDTIKYDDLPWEVEAYAYEVILADLLWENV
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