NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206682_10052120

Scaffold Ga0206682_10052120


Overview

Basic Information
Taxon OID3300021185 Open in IMG/M
Scaffold IDGa0206682_10052120 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2226
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.6907Long. (o)-122.3448Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008425Metagenome / Metatranscriptome333Y
F024797Metagenome / Metatranscriptome204Y
F040126Metagenome / Metatranscriptome162N
F049672Metagenome / Metatranscriptome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0206682_100521201F049672N/AMIPKFENYCFLINNFNLNEASDYEFNPSEAATRLKAREKENIQRYRAAQDRGDNYAIELYELKIKMDKIDLEGLKVQTAIHQLKQKNGK
Ga0206682_100521202F040126N/AMKKVPLFEDFVPVGFATDNARSFSLGGVNSTQTGYDMDAIVGPVQTLGNHVAEQANSYESNDNTEHTAKAYIKEAKKHINDKIDEACETYSAMDEATINEGTDISSWNQAGIKGSDNAQITTFFGPKDIEDFGLGRKCMQINIGRNYVQLNPADIVELKDLLKNYKV
Ga0206682_100521203F024797N/AMSEFLRTGMGRKLLEKDIPKLTSVLERIANQLEIANKLDERKFALEEKLHKIAIKEANQNGR
Ga0206682_100521204F008425AGAAGMADKDITYKQFIAHMDKGNKVYMKKPKSWQKVWFWWESKKEKWFLNKAFDKREDGVVKPEPSVWITAKQMEHHMDHMVRMGYKYYINE
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