NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206682_10055664

Scaffold Ga0206682_10055664


Overview

Basic Information
Taxon OID3300021185 Open in IMG/M
Scaffold IDGa0206682_10055664 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2132
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.6907Long. (o)-122.3448Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006717Metagenome366Y
F056894Metagenome / Metatranscriptome137N
F062153Metagenome131N

Sequences

Protein IDFamilyRBSSequence
Ga0206682_100556643F006717N/AMAELVTIAWVALVTTWNPSVERTIEREFSTEKECWDYYETEISPGTTLAESKWGKQNLTSQNKRPDKNFHFKTVNDYPIRTYKGTGESPSGKDSVWLSCEKERKK
Ga0206682_100556647F062153GAGMSVRIILNGKEVKNVDVLVHTGDYIGYGLRNKSGKKWSLIRNRNKPNLLGVVNHGSINNHKFRGYEWMSDETGDLVGVC
Ga0206682_100556648F056894N/AVNLNDRGNNSTVLARVTKWGMESFKFVNETQAVKARDRWRHSVLNETLNFDLIKPGRCWFVRVTTK
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