NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206682_10057883

Scaffold Ga0206682_10057883


Overview

Basic Information
Taxon OID3300021185 Open in IMG/M
Scaffold IDGa0206682_10057883 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2076
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.6907Long. (o)-122.3448Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011254Metagenome / Metatranscriptome293Y
F087733Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0206682_100578833F087733N/AMKWALIIYFFIAGPGGGWHEGERTFYKTKQECIETMDFFNNMPKPGTLMARCKRADSIS
Ga0206682_100578834F011254N/AVRVDIKTKNPIDKVTITNLDKELLPKFSTIFISENWHKLLIPCSRDNIIDITISESRESIKHCLNSGRETEQGYEIWLHGNLAEYFSRISECIAQDDLLHYKDLDDQYLHTVSWNEKVEGDFIPTHVKQFFATGEGPYWYHKGDFFNLPYITYNGPNVDTDINLDEDLQYTDSKFYGDGQCKSLKQQPVLPIIEIDEIKNKKLRETMQQFGFTEILQMQYVELQPNSVIPVHRDDFTYEDARHIVNGPTQLYCILSGNSKDIKFKFKNAGLIDTSKPIFINNQKFIHSLVYTGEKPRGVLLAYGISSFTSSH
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