Scaffold Ga0206682_10488980

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0206682_10488980

Scaffold Ga0206682_10488980

Overview

Basic Information
Taxon OID	3300021185 Open in IMG/M
Scaffold ID	Ga0206682_10488980 Open in IMG/M
Source Dataset Name	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	509
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.6907	Long. (^o)	-122.3448	Alt. (m)		Depth (m)	40
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021178	Metagenome	220	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206682_104889801	F021178	N/A	GGGRSLKGMEKDISSMLVKIIVDHSDIKPEPNIDKAWSYLGKSTGGKEKSLIIKDYLDGMEKVMKKHSKTLGKLLTAYTKKRIQDEDPDSGDKPMWDELVVNNFKIKMVHISPEFSPDFDGDDDIDGFPFKLYDDVGDMTDYIDRKIQRVKL

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.