NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0223825_10246914

Scaffold Ga0223825_10246914


Overview

Basic Information
Taxon OID3300021255 Open in IMG/M
Scaffold IDGa0223825_10246914 Open in IMG/M
Source Dataset NameSheep rumen microbial communities from New Zealand - Tag 1494 SPADES assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2337
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen → Cattle And Sheep Rumen Microbial Communities From New Zealand, For Comparative Studies

Source Dataset Sampling Location
Location NameNew Zealand
CoordinatesLat. (o)-42.26Long. (o)171.6Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057035Metagenome / Metatranscriptome136Y
F064301Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0223825_102469142F057035AGGAMTEKEFLEKRTPIWLEGEDLHISTPSNMDKNDMHAFLSKKYGYSWIFAIRGYYWPGSHIQLYIGEYETPNCTLLVTQYLFQYFSDIKYIGFGCHIGKPGEIWPAKIVVARNMECLKNDILDKQSKTTV
Ga0223825_102469144F064301GGAGMAKTKGTSRGIVIPVKTQPIWQIGILFPDGKKISKPKCTLNEIFETYFMSLDKYSSKGYSPEQLLELYQKTYYNKGIKVQINYIDSYGHLWKGKVAWPKESKFIEFLEKRLNEK
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