NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210306_1193679

Scaffold Ga0210306_1193679


Overview

Basic Information
Taxon OID3300021312 Open in IMG/M
Scaffold IDGa0210306_1193679 Open in IMG/M
Source Dataset NameMetatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R1072 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)866
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)46.232Long. (o)-123.886Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057114Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0210306_11936791F057114N/AESLGFWWHLSFPDEIRDRTLLKKKNNSDGLLISINVLEFVTVIINYCAALHLVLTEIVTDDKYPVLLNVTDNMSALSWTTGACRKSRIGRLLARFFCSLLINSPLGVNSQWISTTLNTIADEISREKENLNTDNSQYSSFDYSTLQQRFPQLNHCRFFQPSPDLISLIWEIILTEKWPCHNEIRILRQRPLGSLTTLHGAQS
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