NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214544_1014025

Scaffold Ga0214544_1014025


Overview

Basic Information
Taxon OID3300021320 Open in IMG/M
Scaffold IDGa0214544_1014025 Open in IMG/M
Source Dataset NameRoot nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9302
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.06Long. (o)-118.44Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007299Metagenome353Y
F042759Metagenome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0214544_10140257F042759N/ALHPKSWAYLQAFRILCQSLYLEPTPYAFLYFYDTRPRRSATWLSLISRPSISRLDALSQSFKHFKDGYFKVVVKEGGKAHFFNADGSTKFPFSWTSNPSRYKDMGMEELSASDKEVVGMLLKFVDKLPTKGLVRVYNSMHPIIDIEGICLLLKLC
Ga0214544_10140258F007299AGGMAQSGKKNLALFQTLRKEMAAKAKATGKTDVPNLQESVVEVHVHDGTKRKAELPPRPGKGRDVKKVRAALLGMGSSSGEKGPEAGLIELSEISVRKDISTTLQDTIVNSIDNMDAEHIVRAMVEFGSKALVLSRRVGSLYRSGVMEGGRERVEEL
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