NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210295_1160436

Scaffold Ga0210295_1160436


Overview

Basic Information
Taxon OID3300021323 Open in IMG/M
Scaffold IDGa0210295_1160436 Open in IMG/M
Source Dataset NameMetatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R9.63AS (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1756
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)46.249Long. (o)-123.986Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009141Metagenome / Metatranscriptome322Y
F021513Metagenome / Metatranscriptome218Y

Sequences

Protein IDFamilyRBSSequence
Ga0210295_11604361F009141N/ASAAAPTSAELDPTRMTETSMVPFYRSYLLGGKLVYLDKLSELSDSELNMLNIETMASLEEARRDYDAIENKQSEEGGSVYRRLKVAGYFQAAIKLELQN
Ga0210295_11604362F021513N/AMSMYVLSESQFDQISKALEAARFALETSQHVQLDLTKPKQTIPLPAGEKIVRATSVQKTQSQSKTRKSSRKGKRGVAVLNEGQVLEIKRQIASGGKSVAKIARDFGVHVTTINCIKSGKTWKHVALQQPTPVVVAD
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