NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214545_1026669

Scaffold Ga0214545_1026669


Overview

Basic Information
Taxon OID3300021324 Open in IMG/M
Scaffold IDGa0214545_1026669 Open in IMG/M
Source Dataset NameRoot nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3080
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.06Long. (o)-118.44Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002527Metagenome551Y
F046208Metagenome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0214545_10266692F002527N/AMPISKEDDKSSWEQYHIILLSHIVLYSIXSVLDSDASLLVTXVSPPIFGLQHCCRFRKRTQLNMGGIRLNTLFSTTFYIIFFFTSFSFSSVSIPSAVYISSFSILSFSIFPFGVCXSFLACLGVINFNFISCPSCLK
Ga0214545_10266694F002527N/AMPISKEDDKSSWEQYHIILLSHIVLYSIXSVLDSDASLLVTXVSPPIFGLQHCCRFRKRTQLNMGGIRLNTLFSTTFYIIFFFTSFSFSSISIPSAVYISSFCILSFSIFPFGVCXSFLACLGVKNFNFISCPSCLK
Ga0214545_10266695F046208N/AMEVKKKIMEKVVENKVFNRRPPMFSCIRLXKPQQCCKPKIDGETTVTNKLSFESSKDQIQYGTVCERSIMRYCSHELLSSSFEMDMASF
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.