NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214545_1031515

Scaffold Ga0214545_1031515


Overview

Basic Information
Taxon OID3300021324 Open in IMG/M
Scaffold IDGa0214545_1031515 Open in IMG/M
Source Dataset NameRoot nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2132
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.06Long. (o)-118.44Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000010Metagenome7424Y
F000056Metagenome3057Y
F028434Metagenome191N

Sequences

Protein IDFamilyRBSSequence
Ga0214545_10315152F000010N/AVKEVLCDIAPTISCHLLLRWALLHFKTLNLDKRSLCLRHEGHEMKLKFMTPGQAKKDQHTLKEKIEKERIEKEEI
Ga0214545_10315155F028434N/AMERVVENKVFNRRPPMFSCIRLRKRQQCCQPKIGGETEVTNNLSSESSKDQIQYMTMCERSVM
Ga0214545_10315156F000056N/ALCLRHEGVEMKLKFMTPRQAKKDQHTLKEKIEKERIEKEEI
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