NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214545_1039594

Scaffold Ga0214545_1039594


Overview

Basic Information
Taxon OID3300021324 Open in IMG/M
Scaffold IDGa0214545_1039594 Open in IMG/M
Source Dataset NameRoot nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1314
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.06Long. (o)-118.44Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000305Metagenome1333Y
F008539Metagenome331Y

Sequences

Protein IDFamilyRBSSequence
Ga0214545_10395941F000305N/ATRESLFVNVFSSTVCDVILQEQKDKHVKEIHELPCLKRKLVHSALSCIWSVDKKQIRQTQCMELFIVTYQGGVLLPRNVIDGLQPLESNKYQVEFDPGGRQLVSTCEKIKVLHKIIINIY
Ga0214545_10395942F008539GAGMFLSDSRIHEFNQRSYIPLCASTLRLIFHSWKCDVYQYSFHLLLCFHFPVSNFLLVSIPTMIDHSNESNLVDSHHLLFRAWLSRFGIGKEVYYTKCLTEGHPCLVAFDYGSENNVVSQRLVEKLQLPATFHLDQAWIKFS
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