Scaffold Ga0210301_1011105

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0210301_1011105

Scaffold Ga0210301_1011105

Overview

Basic Information
Taxon OID	3300021325 Open in IMG/M
Scaffold ID	Ga0210301_1011105 Open in IMG/M
Source Dataset Name	Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R1033 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	839
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C10FEB	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	46.216	Long. (^o)	-123.951	Alt. (m)		Depth (m)	8
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001055	Metagenome / Metatranscriptome	791	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210301_10111051	F001055	N/A	KSIRHIVEGTLATYLTSQAGLAGVVILTGDSAATQTLPKAVVLCDSARAPGDLQEGLGNYDCSVRVTLFSNADDTTLAVHRERCAALSDCMKSVGLIQAAFATGGDALCYDVTYRSEDEGIDERSWATSFAFDILTCLNPE

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