NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214543_1027383

Scaffold Ga0214543_1027383


Overview

Basic Information
Taxon OID3300021327 Open in IMG/M
Scaffold IDGa0214543_1027383 Open in IMG/M
Source Dataset NameRoot nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2889
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.06Long. (o)-118.44Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000305Metagenome1333Y
F008539Metagenome331Y
F060641Metagenome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0214543_10273832F060641N/AMFDGFASYRQTKCIIKHYEQGSLLNMEVGVFHSHAYPFVPVK
Ga0214543_10273834F008539AGGVSFIQKINEFYLIYLSESDSPKFLSDSRIHEFNQKSFIPLGVSTLRLIFHSWKCDVYQFPFYLLFCFYFLILNNFSNFLLVSIPTMIDQSNELNVVDSHHLLFRAWLSRFGIGKEVYYTKCLIKGHPCLVAFDYGSENNVVSQRLVEKL
Ga0214543_10273835F000305AGGAVNETHQLPCLKRKLVHSALLCIWSVDKKKIRRTQSMQLFIATYQGGVLLPINVMDGKQPLESNKYQVEFVPGRRQLFSTCEKIKVLHKIIINLH
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