NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214543_1031596

Scaffold Ga0214543_1031596


Overview

Basic Information
Taxon OID3300021327 Open in IMG/M
Scaffold IDGa0214543_1031596 Open in IMG/M
Source Dataset NameRoot nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2094
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.06Long. (o)-118.44Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002527Metagenome551Y
F024491Metagenome205Y

Sequences

Protein IDFamilyRBSSequence
Ga0214543_10315962F002527N/AMPISKEDDKSSWEQYHIILLSQIVMYXIXSLLDSGESLVVTIVSPPIFGLQHCCRFRKRMQLNMGGLRLNTLFSITFSIIFFFTSFSFSSISLPSAVYFSSFSIFSFNECGPFFACLGVINFNFISCPSCLK
Ga0214543_10315963F024491AGGMFSGIHLRKRQQCYKPNIGGETQLTNKLSSESSKDQIQYRTMCERSIMXYCSHELLSSNFEMGMGSFYNAQSXXTFPLFEAXGTXNEVEIYDTKTSKEGSTFVEGENRKRGKINCRRKGNXRKRKGSKEKDYGKGNREQGV
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