NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214543_1033429

Scaffold Ga0214543_1033429


Overview

Basic Information
Taxon OID3300021327 Open in IMG/M
Scaffold IDGa0214543_1033429 Open in IMG/M
Source Dataset NameRoot nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1846
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.06Long. (o)-118.44Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002932Metagenome519Y
F007068Metagenome358Y
F009316Metagenome319Y

Sequences

Protein IDFamilyRBSSequence
Ga0214543_10334291F007068N/AMKGSLLYKVFNRRPGHPCLAAFDYGSENNVVSQRLVEKLQLPATFHLDQAWIKFSTWQCVKEVLCDIAPMDSCHLHLRWAWLHFKTLHHDEHSLYLRHEGHQKK
Ga0214543_10334292F002932N/AMCFWSVDKKQIRQTQCMELFIVTYPGGVLLPRNVIDGLQPLESNKYQVEFYPGRKELVSTCEKLKVLYKIIIHLH
Ga0214543_10334293F009316N/ADQAWIKFSTWQCVKEVLCDIAPMDSCHLHLRWAWLRFKTLHHDERSHYLRHEGRQKK
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