NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0210298_1124656

Scaffold Ga0210298_1124656


Overview

Basic Information
Taxon OID3300021328 Open in IMG/M
Scaffold IDGa0210298_1124656 Open in IMG/M
Source Dataset NameMetatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R877 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6919
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)46.217Long. (o)-123.781Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065785Metagenome / Metatranscriptome127Y
F066786Metagenome / Metatranscriptome126N

Sequences

Protein IDFamilyRBSSequence
Ga0210298_112465610F066786AGGGGGMDERIEMKWKCGHTETHTFGYTTNDMKAKMRLMASTLQICAACESKRSIERAWSLTQRLLEPNPIVMSGSEKQIEWARSIRTTKYESLAHVLDCLRQAYETRQDEWPAIARAISPVVNDVSIWRSYSQSGAIIDRRNINWTTAFRNALSRAGLHIGGLK
Ga0210298_11246568F065785AGGAMDTRNIKLTCIECHRTNAVPYGRGHRICDICSQRELKRERRLRTQRRIQMVGSFVVVVLAVWTACAMASDWNTPNSPDHRAHQAMQARD
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.