NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206696_1539700

Scaffold Ga0206696_1539700


Overview

Basic Information
Taxon OID3300021334 Open in IMG/M
Scaffold IDGa0206696_1539700 Open in IMG/M
Source Dataset NameMetatranscriptome of ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 500m 12015 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1355
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.6907Long. (o)-122.3448Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062674Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0206696_15397001F062674AGGAGMANPMYGQNKADSAIQDGRCSVIVAGDDITLTAAQTGSTVFMNNAAATVQLPAAAPGLNYKVILGIETTAGADILAKSGDAFFGIIRLFSDTADQVGVPQQISHATAIGTVASYDTMDFVADTATIGGMAGDIISMIAVDDTAWHVTADLTTTQNNPGTVAVIVAS
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