NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213867_1000002

Scaffold Ga0213867_1000002


Overview

Basic Information
Taxon OID3300021335 Open in IMG/M
Scaffold IDGa0213867_1000002 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)155089
Total Scaffold Genes142 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)116 (81.69%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010166Metagenome / Metatranscriptome307Y
F023480Metagenome / Metatranscriptome210Y
F072835Metagenome / Metatranscriptome121Y
F080078Metagenome / Metatranscriptome115Y
F085330Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0213867_1000002125F080078GGAGGLQHSIEQWIERINAMKDMCIQAHRLRNEYSDLVEQTYDYAEVKNILEQVQSMAAGIANESITEIKTEMDEWKK
Ga0213867_1000002128F010166AGGAGMDMRSYENWREHGADESSVEEVTWNKNDLLTLPWSPTYMTDEIPEDSSWDTFATKNKKALEAMYAQWGVPKEGSLHYMSIRPELTKGLASIIAPYAHMKFNYNFLKLTPGCSLMWHFDTYATFVKYNNIEEDNAHNVCRTVVMMNDWDRGQVLQVGDEVYTGWSAGDTYTWKGDTWHGMANFGPTDIVISQVTFLDEDDRYSQ
Ga0213867_100000222F085330AGGAMKTLYEILNVDLAQEYTKARKLSKLATLDAGELTAEAKTAIAAMDIPEDDDRLHWIMTFGKAAGADLLTLGKVQPENMIKMASLSADDFQECVKVATGSARDWNQLTISAEKDLNQETIPNTML
Ga0213867_100000223F072835AGGAMALPATGSTISMSDIRNYFVGGGFASSYTISVLGTYIGISAGTTISMSSSFGGYYFPILP
Ga0213867_100000280F023480GGAGMYEVNNSYYKNIADDVILHTVSHLTIPFDQKWKKIAVNLSGGADSALLTYILCKIIKENKLDTVVDIITYQRCWETRPWQGYISKKVYHWLKLEFPKIIGERLTTYIPPEIEHGVIGNIVNDRSGDQIIVGSFNKFAAWEYNLDAVYNATSKNPDDLREDRMTNRDKDAEDGNLMDLWMPSKKVNATFVHPFRFVKKDWIVAQYHILNILDLYNTTRSCEGDINHHDIVKSACPSFDNYFPGMHVPECKQCWWCEERKWAETRVKKTIEEINDYNR
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