NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213867_1000030

Scaffold Ga0213867_1000030


Overview

Basic Information
Taxon OID3300021335 Open in IMG/M
Scaffold IDGa0213867_1000030 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)63612
Total Scaffold Genes82 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (31.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011405Metagenome / Metatranscriptome291Y
F012227Metagenome / Metatranscriptome282Y
F024647Metagenome / Metatranscriptome205Y
F040113Metagenome / Metatranscriptome162N
F076113Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0213867_100003018F011405N/AMNYGIEITKPWSKEMYDHNDMVSQLMKLEIIKSIVNFQNDFDKLNELMVLCGGIKYGDSYDIEELKEDCLNEVDNVQNYWLNEEYPLAVSNGLVDDVKLKFVGYDK
Ga0213867_100003031F024647N/AMNYLVNPSTIVTKALGIDSFKQMINDEQIQFSELVDISVQIAEEWTNDWDEGDGFGSSDGTYLLKDFIDTVISNFTNSVYNQSGYQTIFNPTLSVTYKYSEPELVSFEDDGQF
Ga0213867_100003033F040113N/AMRIGYKIFKQIKKWYGSDDFQIGNDDYFTKGRVYSVCTGITLRFGYWQKVDLDGLKKILPDWCNITENTMDDDDCGTLYNYNITDSSKYYAHNQVD
Ga0213867_100003049F076113N/AMAGIKFVHKEEKQIKLKGKPKVPFNKSKKLSTMDGSQSLFYIETETAFKMKLDSFVDFTQKHPQYGNYALITVPIERVEK
Ga0213867_100003067F012227N/AMANLQQIAKQFRISDNFLNSKEDGLLIVASSLQDIIGEMNSGDIDRNRKESLIEKLERLKSFCKEVKNSSF
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