NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213867_1000086

Scaffold Ga0213867_1000086


Overview

Basic Information
Taxon OID3300021335 Open in IMG/M
Scaffold IDGa0213867_1000086 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40427
Total Scaffold Genes66 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (37.88%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Cyanophage KBS-S-2A(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004106Metagenome453Y
F017577Metagenome / Metatranscriptome240Y
F065740Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0213867_100008612F004106AGGAGMVYQTLIDPSYSIGAEFVNDTSAYTGRWRRIVILKNNTSFAALTAQNWTGNSIVGENLPAGFEIQGVFTAFTLDSGGAVIAYHI
Ga0213867_10000863F065740AGAAGGMSAFAFVNYVRFMVNSSTATAYAYQNFSVNVTRTYAGVTYNFLPFAISTGAGSKGGDRSEAVLGAGTNDISVNIFAEAVQSRWLLELKTVSLDITDFSDDALIRSELWRVASYDMDTEKVLLKLTSPLDAVRSDVPRRVLSTELVGALPSSGSLVVS
Ga0213867_100008665F017577GAGGMATTFPSIAPTGRSFVAPRWPTQTQTSQSGVITRRLWGSRPSRATLSLQFNNIDDTDTSAILNAYNTAKGSVDSLTLPSVLFDGADTTLTSWLNASATGAGLLWAFSEDSPPQVESVAPGRSNVSVSLTAELRIS
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