NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213867_1000229

Scaffold Ga0213867_1000229


Overview

Basic Information
Taxon OID3300021335 Open in IMG/M
Scaffold IDGa0213867_1000229 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25922
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009442Metagenome318Y
F016521Metagenome246Y
F057328Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0213867_100022914F057328N/AMIHLVPNNDPNIIYVTPFESRKFLAAFTDYLLVLTNQATEETHICILNVQVDNERYTKADVPTNNDDGVNGEVLITESGLYTYTIYGQNSDSNLDPTDAVVVGVCEVGSCKVSDEAAWTIPNVTIPDNVIYYE
Ga0213867_100022922F016521N/AMESLFYLWVMNETQTPNTMQNKSTKGRDLAYDIATRLRGNEFKDMTLGEIDDFRAEMALFLDLKKEW
Ga0213867_100022939F009442N/AMTLRKVKRMLNESDDFLVFTRKDTGADVANFGVFHKDHDSWEILLNLAVSDYHIRETLRNVLNAADAYRDEQAQNESE
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