NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213867_1000298

Scaffold Ga0213867_1000298


Overview

Basic Information
Taxon OID3300021335 Open in IMG/M
Scaffold IDGa0213867_1000298 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22613
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (86.84%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018178Metagenome / Metatranscriptome236Y
F039123Metagenome164N
F070064Metagenome / Metatranscriptome123Y
F082548Metagenome113Y
F088835Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0213867_100029814F088835AGGMKEISPTDYIVSNQLNFLSGRVVHLVTEYNRTKDIQLLEEACRDLATLVQRERFIEERFSAECSS
Ga0213867_100029816F082548GAGMRSPRAVASDMVKAMDAAAKQVWELEQKKESDEKLKALVFAHVCNSYARRGRYGSKETTG
Ga0213867_100029818F018178GGAGMDRMDQILDRLSQRINEWEGASREAIEAETNFKSFEASSQKAHMDAGASAAKAQTETRSSGEWANHYRTVQQASLKAETLKKKIMLGQLAFDAERTKQANLRRVV
Ga0213867_100029821F070064GGAGGMGRVKSEMFEEYLGPDDELVAKPISQVVDNIRYCDLPSNSVERFEYLSNQLKELMNGIRTNTD
Ga0213867_100029825F039123AGGGGGMDKNEFTALYDQWFALHPFKKRDWVELGKVHYQAFGKESVALMTEALGQLTEELDRFPLPKDIRSKLNKLSSSKTEGGQTKSNVTSESEQIATRLLEHRHGVHYNGKVVKRPENVPAWIEQLVERVDNELGVQYPLTAKLGTLGFMVVQTEGRR

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