NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213867_1005189

Scaffold Ga0213867_1005189


Overview

Basic Information
Taxon OID3300021335 Open in IMG/M
Scaffold IDGa0213867_1005189 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5610
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (38.46%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002564Metagenome / Metatranscriptome547Y
F006785Metagenome / Metatranscriptome364Y
F052478Metagenome / Metatranscriptome142N

Sequences

Protein IDFamilyRBSSequence
Ga0213867_100518912F006785GGAGMSGGEWTTKGRQREAREAEREQVRLEKRQLRDLRWAIERSTVKASDWADLLTLHQMHGKEGPLQLWRELVPYWRDCQRVNRGADLPAELFPQATGVLTRTTEKAPATRVKAAKGSSRKVRSDAGKAQPSRKRSS
Ga0213867_100518913F052478N/AMAGAMLILAGVLIGLYGLAVLLGDREPDGTVREGVAGARKRRRGQSKR
Ga0213867_10051893F002564GGAGMMALTISRGTNLVEHHESTPLTAVDDYLEVHADSSEFTFAAIVTGGANFTLVFECSFNGGGTWFELDTSKTINSNGQYAYFYSGRPANKVRMRISAISSGTPSVVPIIAVAYHG
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