NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213867_1008589

Scaffold Ga0213867_1008589


Overview

Basic Information
Taxon OID3300021335 Open in IMG/M
Scaffold IDGa0213867_1008589 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4343
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (71.43%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004343Metagenome / Metatranscriptome442Y
F008882Metagenome / Metatranscriptome326N
F013295Metagenome272N
F024204Metagenome207N
F044193Metagenome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0213867_100858911F044193AGGTGGMIIKEYQKEYKDYFMFITVHHSLIEVSVHSYVDDDFKYSNRFIDYSVDEIYETICYRIDNNDLLEVA
Ga0213867_10085895F004343GGGGGMTQHREMIEEAKRLLNSERENIPSMSKNFGKDYWLLTYPCGKIVKTYEDKRKKDVVIQES
Ga0213867_10085896F013295AGGGGGMKINNLTPKQFARREIIKYLRDLFDNPAKYIQGFDDLTHKQQEEILRFISLDEHRIDKLLNLPMGES
Ga0213867_10085897F024204AGGGGGMNNYSYLEILEDGIEVCASCGGANLNSNRNIDDQDNTKPQDHCFNCDYAEGTNLCMPNDLHFYQEAKETLNKINKGEL
Ga0213867_10085899F008882GAGGMNIKRYNFNKPKINRQELELLNFFLAHTNDNPLINPEALELFKANGYSAKNYQDLVNKVKTILKTYKTKGEK
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