NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213867_1009698

Scaffold Ga0213867_1009698


Overview

Basic Information
Taxon OID3300021335 Open in IMG/M
Scaffold IDGa0213867_1009698 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4080
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (44.44%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032961Metagenome / Metatranscriptome178N
F034111Metagenome / Metatranscriptome175N
F035678Metagenome / Metatranscriptome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0213867_100969814F032961N/AMQLTEKAKIYKNVWCCAYQRRHFYRQSDRYHREHETILMCLNMKDAKWWEFDTEKPKYFTKYQE
Ga0213867_100969815F034111N/AMLELTLASLLNTMAADFCALMETEKDVVKATFLSYSMANKQYGPDNVIKIINEASPLEIKSLAVSSVVTKCPNKL
Ga0213867_100969818F035678GGAGMSEEKKYSRYRIDQLAKELGGTWHHKVITNGRQEHKQIVIEYDHKKT
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Institute for Fundamental Biomedical Research
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