NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213867_1012200

Scaffold Ga0213867_1012200


Overview

Basic Information
Taxon OID3300021335 Open in IMG/M
Scaffold IDGa0213867_1012200 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3617
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (53.85%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004376Metagenome / Metatranscriptome441Y
F019389Metagenome230Y
F060808Metagenome / Metatranscriptome132N
F073432Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0213867_10122001F073432AGGAGMTLENYETKIRSANKGEVFEYYVGYLARDRFYDYSIRDKANLLMRLEGSGIVELYQKRLTHGNINHDPKFQYLARKI
Ga0213867_101220010F019389N/AMNWKDNFIKFINKLSKKKGWKCDDMNPYFYQIDLLRFSNAKSLREYKQQQKQKERK
Ga0213867_10122004F060808GAGMAIDFDALDLIRGKNKAKRHEAIKQQQREQKEKDIKYFMNQLSEIKRDHDLCQDPAVKKLLLDKWYGVVKLCIKKIEEK
Ga0213867_10122009F004376N/AMTKCLDCNFVEGTLLKEFDNEENYSWYELSQMTEVCASCGSENIKTESEGK
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