NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213867_1015998

Scaffold Ga0213867_1015998


Overview

Basic Information
Taxon OID3300021335 Open in IMG/M
Scaffold IDGa0213867_1015998 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3113
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000913Metagenome / Metatranscriptome838Y
F097118Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0213867_10159985F000913AGGMKYFYVEHYGEEIRIEWNESATFNLQMPVGGEWVDYHCFTCYGIESEHEALEHAMEVLLESENEVA
Ga0213867_10159987F097118AGGMIKFPSGLKFGKGEDSLVDSLFTGSTTNDGWYTVTGRKYKTMRFFTGNGKPLFYIVSNKHGITSGNLTSNDNKFYYMAGTCSLTSKKLGLDKLDYTTEKTLITDIIEAV

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