NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213867_1017262

Scaffold Ga0213867_1017262


Overview

Basic Information
Taxon OID3300021335 Open in IMG/M
Scaffold IDGa0213867_1017262 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2983
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006845Metagenome / Metatranscriptome363Y
F018155Metagenome / Metatranscriptome236Y
F058166Metagenome / Metatranscriptome135N
F067646Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0213867_10172622F058166GGAGMADILGGMSNPNSESQQVYLAFKTAQQKFFVNGETEIEFKYLQLDPATFKSGWGRYAGEYQYQWDAKFGVAESKPADDWKRAFSCCVMPHGHDHALIWSRFTFAESSAFNKILSGFWNQMDANSDSLPVVEYKGSKEIQVGMGRSSELSFEFTKFAPRFDNFVIPPFYDNDGGSSADDGFKSPNDGLADLVNKQVNDSNDLLTDEDIPF
Ga0213867_10172623F006845AGGMDLNSYLLEQDFEDYCRFAYEKIQSACEFLGIINDEDYESFKERCYSELEANYLNSIEKTIH
Ga0213867_10172625F067646AGGAMLEWILYFIAGIFGLVFIGIILSVLAFIYIIKELD
Ga0213867_10172626F018155AGGAGMGQHKAAVEKRRKELEAEKLDKQIKTYYFQKGAGKHYREVTYMSGKVVRTDFNA
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