NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213867_1034585

Scaffold Ga0213867_1034585


Overview

Basic Information
Taxon OID3300021335 Open in IMG/M
Scaffold IDGa0213867_1034585 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1990
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001588Metagenome / Metatranscriptome667Y
F039087Metagenome / Metatranscriptome164N
F088412Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0213867_10345851F001588GGAGMQNNVFLNACNAAIVVTVNNKIVATDVQTSDALVQVFLTHKIDVLNDVIMCSSSIDFAEEEGFASDASAHNIIDEAFELLA
Ga0213867_10345853F088412GGAGGMLKLTNKTVEIERDADLQETCTVTEYDVDGTVTLAGDGLWGAEGGRVVRVESIQVRETLYEEDGDSSTMVNVTHDSTWDIYTDSGFEAAVSAALGMDITFTEQGMQDDNYASMEV
Ga0213867_10345854F039087GAGGMQNTNTKTARSIVRKILKANNVKYSAHSYTNKCANPSLRNLCFLTLNLTPAVLQQIAAALPNVAKVHATKPKFYNVHPNARYLRIVH
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