NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213867_1089981

Scaffold Ga0213867_1089981


Overview

Basic Information
Taxon OID3300021335 Open in IMG/M
Scaffold IDGa0213867_1089981 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1111
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016661Metagenome245Y
F079927Metagenome115N
F095309Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0213867_10899811F079927GAGGMSKDYREQSQLEDEADEKYLTMYQYYKELTDYERGEYDALHSYPFDESEEANKEYTEGYRTGYAYAQQMGANDNG
Ga0213867_10899814F095309GAGGMSYSEYRKKLRMLSVKYNEAYKRLGWGADTTRKLRQQKIDLRAKYAVHSFDYAVETLTSKGIL
Ga0213867_10899815F016661AGGAGGMNYSAERYLALKQFEREQQRDKIRAVLWNVSIGGLYAMVVIQVFRGFIL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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