NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213867_1102914

Scaffold Ga0213867_1102914


Overview

Basic Information
Taxon OID3300021335 Open in IMG/M
Scaffold IDGa0213867_1102914 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1020
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059018Metagenome / Metatranscriptome134N
F070161Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
Ga0213867_11029142F059018GAGGMAVPKIKVSPALKKKLAEIDQMVEDAVERKMTDVARTVVLASPVDTGAFVNSWSFKDNLGGGRSKSSLGKPTGRDKGSERGKALNNLVNDIKKTVEVGSPGGPVKEGIGIQADNYYFINRSPHAKEVDNNPKHQVVDKVIRQHGR
Ga0213867_11029143F070161GAGGMSFNASDVLRLVQDFGEPLTLRKVTKTGSYDTSSGTVSGSETLDYSFTGYFYNLAEGTFDLNKTRKGSRVCVIAAKGLSVTPDDEDQILGYGDPVNIQTVRTIRSNGQPVCYLCEVFE
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