NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213867_1115718

Scaffold Ga0213867_1115718


Overview

Basic Information
Taxon OID3300021335 Open in IMG/M
Scaffold IDGa0213867_1115718 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)947
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019467Metagenome / Metatranscriptome229Y
F088827Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0213867_11157182F019467N/AMLTSSKERKLNRDAEREAARRLKIEWADKLWLAQNHPCSDEILAWLAEHRGEASKIGSSRWNLETLPELHAKQQQLRQAAAFQEVLDRAKVSHQTLTAEAVLAAGSFPQNPQDKPVENQKTRRIRSDKGVRGASRAHKRQPSRKGARK
Ga0213867_11157183F088827AGGAGVSLSDFASQYAPALADIASQLEEHDAVICGCSAGPQKPDAPEQRQHLDICIDNPWREPDQWVTVYSASHCEWWSHGEEYRLSLADLLAYLRQLPRPLHSFSKYQP
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