NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213867_1174987

Scaffold Ga0213867_1174987


Overview

Basic Information
Taxon OID3300021335 Open in IMG/M
Scaffold IDGa0213867_1174987 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)725
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Fussvirus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024137Metagenome / Metatranscriptome207Y
F031926Metagenome / Metatranscriptome181Y

Sequences

Protein IDFamilyRBSSequence
Ga0213867_11749871F024137N/ASDFDYHITDLRSQYPNQLVYREAVGVLPFYCKTNEVDDEYERTSSIKLGDCNIRYTFDRLVKSQEEVDENITHLFGDPRVPMITDLLTQTQIRHNEPKSLRVLNFKKEGKNVVNLHSK
Ga0213867_11749872F031926GAGGMSLTCTVSNIQFDFAFNRAVETAKKSISKEDVTNFTNGIPNQTVLIFKTICCLPDEELNTRVIAEWYYKLFGVAISTTSTVRNMKKLAEYGLLDVADNPHGKSHKYTWIKLTQSGRKLQKLFMGSASDWKD

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