NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193719_10008511

Scaffold Ga0193719_10008511


Overview

Basic Information
Taxon OID3300021344 Open in IMG/M
Scaffold IDGa0193719_10008511 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4279
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9362Long. (o)-106.9425Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043437Metagenome / Metatranscriptome156Y
F071443Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0193719_100085112F071443GGAGMFGVFFSILVVLGLVGIFGEIVMRVRLTKRETSRDKLAWWRRGGDDVAATYEELFPDSRIPRFRRFVFWLFIVWSGVLVLSMLLRKLN
Ga0193719_100085117F043437GAGGMRVNRFLLAMAAYIVLAVLSWNTITDEKLRLATMAVLALFAVKTVVRRKDVLHSDSKPDGAE

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