NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193719_10067991

Scaffold Ga0193719_10067991


Overview

Basic Information
Taxon OID3300021344 Open in IMG/M
Scaffold IDGa0193719_10067991 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1546
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9362Long. (o)-106.9425Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010628Metagenome / Metatranscriptome301Y
F062888Metagenome / Metatranscriptome130N

Sequences

Protein IDFamilyRBSSequence
Ga0193719_100679912F010628GAGGVTFDERGYIGSAPELRQLVVALSLGGLRRKIEALMVPDEPIVVLQLDGHAERERHRRQA
Ga0193719_100679913F062888AGGMKRREFITLLGGAGAWPVAAQVNQGSWIRTITVQVIASVVLLQTWTIAGADTAAVPSDYTFVDELVSDLGFQPSDLIERVRYLANIPSEATMQHRLSYCVQGYADRIATDAKLREKVVSEVEDRTCAQLGLCQERGQQRTDQ

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