Basic Information | |
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Taxon OID | 3300021347 Open in IMG/M |
Scaffold ID | Ga0213862_10000089 Open in IMG/M |
Source Dataset Name | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 34710 |
Total Scaffold Genes | 55 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 44 (80.00%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: North Carolina | |||||||
Coordinates | Lat. (o) | 34.7181 | Long. (o) | -76.6707 | Alt. (m) | Depth (m) | 1 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F011087 | Metagenome | 295 | Y |
F015870 | Metagenome | 251 | Y |
F036716 | Metagenome / Metatranscriptome | 169 | N |
F051181 | Metagenome / Metatranscriptome | 144 | N |
F072377 | Metagenome / Metatranscriptome | 121 | N |
F092048 | Metagenome / Metatranscriptome | 107 | N |
Protein ID | Family | RBS | Sequence |
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Ga0213862_1000008923 | F036716 | N/A | MDLERAGESINIEKLKARLQKRFPDYNFDVPAPPDTKCKAPFYCKQNEIKYTDMEGNLYCGYRYKMTDEKNPFTWEWKVCHALLEPVDIQAKHKEDEVELF |
Ga0213862_1000008925 | F051181 | AGGA | MDDLLEQAQENIKKVVDEQQLQTLYVVLQESLDELDQAEHLVKTYKELRDKAIKGLYNVGVSAQSLATTTNLTRQMIHRIVK |
Ga0213862_1000008926 | F092048 | AGG | MIKIDMPRDCRQIVVAFNRSFRIFPSTSEVERYCRRNRLEVVSQESQMGSFIVTLKRADSTI |
Ga0213862_1000008929 | F072377 | GGAGG | MSYVNQIDWNCGCMRMTEFDYRTHKERTVGRSYCNKKNCDRRLQKI |
Ga0213862_1000008933 | F015870 | AGGAGG | MFSIEGLIITIGFIIVLRVAIVGTLNEVRYYRMIREYERLFPEVWK |
Ga0213862_1000008942 | F011087 | N/A | MSDYIKGKQYPNHKPSTTYSSGRVCVHKECQTVISKYNKFKYCNNHKPRSYPRIKGRQAPTDLQEPLQ |
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