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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021347 Open in IMG/M |
| Scaffold ID | Ga0213862_10000276 Open in IMG/M |
| Source Dataset Name | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 22694 |
| Total Scaffold Genes | 37 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 27 (72.97%) |
| Novel Protein Genes | 11 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 8 (72.73%) |
| Associated Families | 11 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: North Carolina | |||||||
| Coordinates | Lat. (o) | 34.7181 | Long. (o) | -76.6707 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001582 | Metagenome / Metatranscriptome | 668 | Y |
| F001942 | Metagenome / Metatranscriptome | 613 | Y |
| F004956 | Metagenome / Metatranscriptome | 417 | Y |
| F005495 | Metagenome / Metatranscriptome | 399 | Y |
| F006845 | Metagenome / Metatranscriptome | 363 | Y |
| F007417 | Metagenome | 351 | Y |
| F008281 | Metagenome | 336 | Y |
| F008595 | Metagenome / Metatranscriptome | 331 | Y |
| F012117 | Metagenome / Metatranscriptome | 283 | N |
| F013088 | Metagenome / Metatranscriptome | 274 | Y |
| F018155 | Metagenome / Metatranscriptome | 236 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0213862_1000027615 | F008595 | AGGAG | MSKEDNKMENQEPVIITYNGTEYRASDLNEEQMALAAKLNVAGKKLARLQDAYDDYVITNEYKNLVIESFDRAINAEEEVEVVEEE |
| Ga0213862_100002762 | F005495 | N/A | MLKWNGGSNTPNLNMKKYKILTDTMAGGSKVHAGDIVELPEHEGHALCGYGKAEVHVGKPKAEKQDRSVGLKTSKTKAPKTRAKK |
| Ga0213862_1000027620 | F001942 | N/A | VPRKTSDQHQANSRLGALGESLVQTFLLEYADFCYPTQEKHPADLMVEFGSAKYTVQVKSRRATKEKKFIFAAENSRSMSETYKHYTCDILAFVFFNEDKKRIMFKANTSSQNYFTFDSKVITESMELDSLKETLDNLSSVPVLNPLI |
| Ga0213862_1000027622 | F007417 | AGGAG | MTRYTLQVQLPSLGWVVAIKTSDLFYMASKRARLIKEGHKVKLTKEKKQ |
| Ga0213862_1000027623 | F008281 | AGGAG | MNLMCNTKHGVIQWRWKDTGQPSPEYKSLNHQWWIPKKSDFELVTEVDASIKQEIKDEIWEDMQSDFDYQKGIYKIHKLNKKNLK |
| Ga0213862_100002763 | F001582 | N/A | MPLESALDFNAYVDTTTGHGVTATFFEVQSSLWDARQGLIDTWFDIDSGDAYSVNIIIDQEYFNIEGGTVPVAGYQPRAIIKSSDVPYISQEDKLVVDAITTDKGSVLKPETTFLVKTVEPDNTGLVSLVLEEQ |
| Ga0213862_1000027631 | F013088 | GGAG | MDEKTKKALWIPEELHKDIKVFAITNNMNIESATQLLLKLGMVSYKENNHGSK |
| Ga0213862_1000027632 | F018155 | AGGAG | MGQNSAAVEKRRKELEQEKLDKQIKTYYFQKGAGKHYREITYMSGKVVRTDFNA |
| Ga0213862_1000027635 | F006845 | AGG | MDLNSYLLEQDFEEYCRYAFERIQSACDFLGIINDEDYESFKERCYSELEANYLNSIEKTIH |
| Ga0213862_1000027636 | F012117 | AGGAG | MDILGGMSNSNNESQQVYLAFKTSHQQFFANGETPVDFQYMQLDPATFKSGWGRYTKVSGFEYVWDDKFTVISPQPADDYKRAFSAWVFPQGAQHAYLWQRFSWAESTAFNNILNGFWNQMDANSDSLPVVKFEGSKPIQVGAGNSSDIQFSFAKFAPRSDGFVIPQWYLDQEAPVEDTFKSPNDGLSDKVAEMVSQNELTDDDIPF |
| Ga0213862_100002766 | F004956 | AGGAG | MKMISPDGKVSIEAHPSKVESLLNMGWKEEAVHSQDKIKSSSKKKSKDEVENGNT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |