NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213862_10002609

Scaffold Ga0213862_10002609


Overview

Basic Information
Taxon OID3300021347 Open in IMG/M
Scaffold IDGa0213862_10002609 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7434
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (38.89%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026712Metagenome / Metatranscriptome197Y
F031255Metagenome / Metatranscriptome183N
F035552Metagenome172N
F050369Metagenome / Metatranscriptome145N
F077286Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0213862_1000260911F031255N/AMIKYFNEVVAELQSKGTIFGAEYRKKNGELTKINGRFGVSKFVKGTGTSNPNVLTVWDNNRKRYTSLIPDNIVSLNTNKQKYIKSDEFLIENYE
Ga0213862_1000260912F077286GAGMSKYKYTVEWEGDVANYKQDFETIEEARIAMIMHHKRNAVIHVIKIDDYA
Ga0213862_1000260914F035552GGAMKIKDDLLISADINNLYWVIGELANKAKEDNDLIKVLLQLEQFVETHKTRTRDMVTYRDTIERARNEYRSLKLKYDGTVEALNLKTKLLSQIMNEKMDEDVNNQF
Ga0213862_1000260915F050369N/AMKITEKDLRNWFPRDMRFLHFCAKYYGYSFHNDEVVERANHLAVLNVMRLVNRDQEFEDEAHMTGIVMSSFRYAILNAYSNSLSANEKNLEVRNDSELTYGFGDEEYSKYQASAVADTKEIDNLVDFVTEYAETNLPYLQRRALVECVIGESTMKELATDTDTSVRKVHLAKQKAIRRVKKLIGALNENEKKYGKKETNGKYISPSRSKLQIEIQLEPVRRNEERERDYSKAMSFIHTPPKV
Ga0213862_100026097F026712N/AMYWTVNTTEQETLMDLVIREQRLRGESMDNYNVQEVAYRQAISDGAMRTDNYFNK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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