NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213862_10067883

Scaffold Ga0213862_10067883


Overview

Basic Information
Taxon OID3300021347 Open in IMG/M
Scaffold IDGa0213862_10067883 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1262
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003769Metagenome / Metatranscriptome469Y
F103423Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0213862_100678831F003769GGAGGMQQLKTITVKTSNKVESVHTDTLYAIIENCYNSLQIVEADCTGASYFLSSANIFAQLQELYASNMHYNEYVSLQSVMEIFANNITYYDEEYSLFTSVVENTAMQNVKLQDYTCLHN
Ga0213862_100678832F103423GAGGMHTKIITTREQELTEGNYVEGVVVQFKDKYFWLLDNGDCTETDVSTADLNCADEFTALQVFDAITLADKTNLDYSVDKVAEFAEDLYTQTTDIKYKADV
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