NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213862_10182848

Scaffold Ga0213862_10182848


Overview

Basic Information
Taxon OID3300021347 Open in IMG/M
Scaffold IDGa0213862_10182848 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)738
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081085Metagenome / Metatranscriptome114Y
F103043Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0213862_101828481F103043N/APHEGGLVSSKETLVLFTLAIANAPMTIGDIAFRSKVSYNTIKKIVDADERVTKVGKHPTMYYMAKPDVLDEQVIRLSGDTPREGWVEWVAKVSPKLAQFVRIDRANDSDTVHKQGMVLEALGTNLILLGRQLQEHADKPDWFTLIGGNEDD
Ga0213862_101828482F081085GGAGGMIDNEFLDDNEFFVDDLYDMDEAQLRKEVEQYARLARRYPHPTTRNQLPYQFAYLRHNEAMKILEARSNG
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