NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213862_10192213

Scaffold Ga0213862_10192213


Overview

Basic Information
Taxon OID3300021347 Open in IMG/M
Scaffold IDGa0213862_10192213 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)718
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080815Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0213862_101922131F080815N/AIQECLGHFFHFWHLITVAKSLNVPVFSVESLLLSNSRDEALIVLKASGACTSLSIGSAEMCEAFVDNLREMQSVPTWMHVNVTEIFKDASSFSSVSLMLDREKKYYEHTKCAPVLSTLTSWCRDNIKNCATVSDVYSGATVGTTLDYLSPLKQGGVTNIDEIFNRTFSPRGLLLPGEEKRTTEAKRLQDSVVYAAVIMGAFFTLAGLVRFFRSRKSLEVVQVI
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