NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206695_1311216

Scaffold Ga0206695_1311216


Overview

Basic Information
Taxon OID3300021348 Open in IMG/M
Scaffold IDGa0206695_1311216 Open in IMG/M
Source Dataset NameMetatranscriptome of ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 200m 12015 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)529
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.6907Long. (o)-122.3448Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013771Metagenome / Metatranscriptome268Y

Sequences

Protein IDFamilyRBSSequence
Ga0206695_13112161F013771N/ASYPVIGDIVITTYTKGFATADTCSLYEISDDTCGQSDLNCDYVKYAKAAEKSLQDGTCADQGYSVKTGTQTKSYPFIGDIVITTYTKGFAAGDTCSLYEIADDECGQSDLDCAYVKYAKAAEKGLADGTCADNGYSVKTGEQTKSYPVIGDIVITTYSKGLAVADTCSLFEIADD
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