NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206680_10005370

Scaffold Ga0206680_10005370


Overview

Basic Information
Taxon OID3300021352 Open in IMG/M
Scaffold IDGa0206680_10005370 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 150m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4767
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)150
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001493Metagenome683Y
F001930Metagenome615Y
F005685Metagenome / Metatranscriptome393Y
F006919Metagenome362Y

Sequences

Protein IDFamilyRBSSequence
Ga0206680_100053704F005685GAGGMKKFNEYSSFEDKILGTLKRGPCDLMTLSHKLKEDIMPVSSMLEHLKVYDKVEMFKEKWQIKRTKKN
Ga0206680_100053706F001930AGGAMKRFKQYLKEGVAWELSASKMIFDFQNVPDMKIPFTSKTMEWIFKVQLPRATVFHVTSGIGLEKLKKLQNKKKSISAFFNMTADYIDSGIKTEGGVVAELDANIIISSKSDIMSQPDKTGRRWVALYNIDPKYKMEKEMTQMLIDLAVKHDPRNKEYLKTSPEIGVGVWWKLQSDLQTNFAKDKAGKKMALIIADYIDGVNVILNKHKKEIQGAVHGYYVRRGTIAVKHASGRMVGGDSELSEWSAWDEQVVDKIKIEKVHTYNTARRSGDWVKTDIIPNLGKIPHKHWKSTKELSTYISQVADAEVRVLRRSKG
Ga0206680_100053707F001493AGAAGMKSFKQYLQEGPPAWTESLSTMLFDLPREGLKDLKIPLSPAIFKRIWPESVRSKVFHLTDLDGVGKLKKMQGKKKSISAFYNIEDYILTGGIKTDGGYVVELEGDVLAAAPDDVSSQPDKTGRRWITFSSLMNPSTASDPGLSGGKKLKGIEKDLEKLLVEIMTKNGLGPYKKGLTTRELNRGWSYLGKSTGGKEKSIIIKDYIDGMEKIMKKYSKPLKSVFTDYAFDKELVPDPDSGDKAMWDEIVVNNFKIKKIHVTEEFGEDWQEDDDIEGFPFELYPNGNGDLIDYIARTRN
Ga0206680_100053708F006919AGGAMKSFKQYLIEFAIRSTSDYVFNAGFNSSGLMIPISGPMFKRIWPDTIRTTVFHVLSAEDIYELKKLEGKKKSISAFFSMMARQFEGGIAAGGGVVAELDADVLISARDDIMSQVDKTGRRWVEMSWFANAQSYGTGPKFGKVEKELNSLIKYLVSKHLTSILGKNTVISTHEYELWGGMKRHLKGDGKKLRLVIKDYFDGVERVIKKNKEVMSSIFYGYAKSKRQTDNAWDEQIVNNIKIKKLHYLPKEEEVENEEQQENIDAFVAKYKIPAKAWSYSSELEIYTREVVAKEIGRKI

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