NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194047_10000162

Scaffold Ga0194047_10000162


Overview

Basic Information
Taxon OID3300021354 Open in IMG/M
Scaffold IDGa0194047_10000162 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L221-5m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)46996
Total Scaffold Genes86 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (11.63%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families9

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.701Long. (o)-93.727Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026551Metagenome / Metatranscriptome197Y
F028487Metagenome191Y
F029671Metagenome / Metatranscriptome187Y
F034547Metagenome / Metatranscriptome174Y
F039634Metagenome / Metatranscriptome163Y
F053807Metagenome / Metatranscriptome140Y
F070891Metagenome / Metatranscriptome122N
F091365Metagenome / Metatranscriptome107N
F092025Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0194047_1000016216F026551N/AMAKATSSVKKISFGKRKGGKASKTKGPNDKAVSKYRGQGK
Ga0194047_1000016224F092025N/AMSEIFNLNDYAKQSPKFDPSKKYTWSQDAKFTIDGNDFGMLLNTLRAITGTKEAQTILLAHDAGDVLEKTLADAVEAGIVVEVSENK
Ga0194047_1000016232F034547N/AMKSAKITNKQAKSVKPMTAGKAKGSGTPRPAPKVAPPNPINGNYMKEADTPARLKSKMWPLKQKRLSK
Ga0194047_100001624F029671N/AMKSIELKVAKENIGGRETFLTTYDLLKSAINNPSKEGFSVDEMIKRLRLLNEVDKHKATFEIEEGKFDDSMLDKKATLELEDADFTKLKELFKEMKWGVVSTTIVDLHNEFEK
Ga0194047_1000016244F028487N/AMYNSDILNHLISKYGIDDVIKFCDMESEKNALLAQSVEEDKQHYPEPNEWKFERDWWAESGKQLKSRI
Ga0194047_1000016261F039634N/AMRLDIKTYNTLPTTKSHWWQMVVLPTLSVMNNIQKRDPYVAFNFEWLFWSFTTILSYGKKGTFFTR
Ga0194047_1000016278F053807N/AMSYSLVFSAKPHCTRTITVYEPTQEFSPYMRSIRACSKLIDAIFAIKANYKPSKRLHIKGRRYMYISSDEYKLIRVKDFSK
Ga0194047_1000016279F091365N/AMKKNMKKYSQTELTTMTEMAKKPISTSKLARRLAKEFNRTYVGVYARLLTIRKNVIVEPKTVTGTVTKTPVQAKSHTISSRPTKIEISDAGMTFYF
Ga0194047_1000016282F070891N/AMMNGQLMTLNQMMETMKQNNNSFKTKEMKKIFDILFKDKEPEEQPLKLEIKLKSTATPDEKLDQNEWFRHIHDSLKKSR
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