NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194047_10002929

Scaffold Ga0194047_10002929


Overview

Basic Information
Taxon OID3300021354 Open in IMG/M
Scaffold IDGa0194047_10002929 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L221-5m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9606
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.701Long. (o)-93.727Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007848Metagenome343Y
F011648Metagenome / Metatranscriptome288Y
F017467Metagenome240Y
F040482Metagenome / Metatranscriptome161N

Sequences

Protein IDFamilyRBSSequence
Ga0194047_1000292911F040482N/AMTWNLRLVNMSSPYEDYFEIREVFYDTMGKPMGHSKAAIGGEDRLEVDRYIELAKLALDKPILKFANNENTSKDPEGK
Ga0194047_1000292914F011648AGGAGMSEQEQDFNSFQEHLERIFKDLEDGVFITTDEIGDLRYACGLPSPVRKNPVLKAVFDDFSNIFRSKQ
Ga0194047_1000292918F007848AGGAGMKDFIGACLLGAVLGCMFGYGTAKAQSYPMTDSRGYNVGTVQIQGNTAQFVNPAGVTTQTATIYPNQVVITSPSGYTQSVVGNTGYTVPMSPPTPPSPRVLQ
Ga0194047_100029298F017467N/ALNPDNYLVEWYIAVAKKRGWPAVVKLLAQYPDKEERIKMLIKKRLKK
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